PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.175730.1

Common Name

Csa_3G733950, LOC101203710

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 579aa MW: 64926.2 Da PI: 4.9405

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.175730.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	483	522	12	55
H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R R+ i +++ eLr+++P+ +K s Lek+++++ +Lq Cucsa.175730.1 483 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 522 447889**********98.....899999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.6E-17	6	124	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00152	469	523	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-5	470	535	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-6	471	537	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.718	472	521	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
METLSLNHLL KSLCTHSQWI YAVFWKINYQ TPPILAWEDG YCNYSKLEKH VGNIEYRMIR 60 EADQHATSYY GTNTYDGDSG SCSVEPAVAD MFCLQYALGE GTVGSAASSG NHSWVFLEDI 120 FARNLSSASI YEVTENLSVV AYIKDRFNDI NFVDGDACAS VVPRPFESLD EQTNFTTYML 180 EAENHGAIHD IKPPVSTFNQ CVTIQDVLTV SRRIRPETLH CEKGHKSDIH RTNMEELFAP 240 LYQSVSTGEV EFSDFISLES LLPLGSQLRN HETGLFESNP HIFHSYSLDN VVGQQSGHNL 300 ATKKEYGIAD NFFSFPDDCE LQKALGPVLL AQKHTNEFSY DPSSTVKDNT SSMLCSRDLK 360 EGDIEHLLEA MISAEDISDD TFSNNTINAR IADLVAKPCL STNTYQSESS TIVVNDPALW 420 NIPESTTTAT GRKNLTSLST SNSLVVNERE ERDRDMAQHR KGMKRSNSSR QIKVTSNTRQ 480 RPRDRQLIQD RIKELRQIVP NGGKCSIDGL LEKTIKHMLY LQRVTDRAEK LKQLAQQEDF 540 DSENCTDLEN EGVQPNGTSW TWAGSGIPGT HAYKDAMQ*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

METLSLNHLL KSLCTHSQWI YAVFWKINYQ TPPILAWEDG YCNYSKLEKH VGNIEYRMIR  60
EADQHATSYY GTNTYDGDSG SCSVEPAVAD MFCLQYALGE GTVGSAASSG NHSWVFLEDI  120
FARNLSSASI YEVTENLSVV AYIKDRFNDI NFVDGDACAS VVPRPFESLD EQTNFTTYML  180
EAENHGAIHD IKPPVSTFNQ CVTIQDVLTV SRRIRPETLH CEKGHKSDIH RTNMEELFAP  240
LYQSVSTGEV EFSDFISLES LLPLGSQLRN HETGLFESNP HIFHSYSLDN VVGQQSGHNL  300
ATKKEYGIAD NFFSFPDDCE LQKALGPVLL AQKHTNEFSY DPSSTVKDNT SSMLCSRDLK  360
EGDIEHLLEA MISAEDISDD TFSNNTINAR IADLVAKPCL STNTYQSESS TIVVNDPALW  420
NIPESTTTAT GRKNLTSLST SNSLVVNERE ERDRDMAQHR KGMKRSNSSR QIKVTSNTRQ  480
RPRDRQLIQD RIKELRQIVP NGGKCSIDGL LEKTIKHMLY LQRVTDRAEK LKQLAQQEDF  540
DSENCTDLEN EGVQPNGTSW TWAGSGIPGT HAYKDAMQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137928.2	0.0	PREDICTED: transcription factor EMB1444-like
TrEMBL	A0A0A0LFI2	0.0	A0A0A0LFI2_CUCSA; Uncharacterized protein
STRING	XP_008442512.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10712	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-22	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Cucsa.175730.1
Entrez Gene	101203710

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]