PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.177640.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 248aa    MW: 28866.7 Da    PI: 8.3234
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.177640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.8e-29143197155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt+eLH+rF ++v+qLGG++kAtPk++ +lmk kgLtl h+kSHLQkYR+
  Cucsa.177640.1 143 KTRIKWTEELHQRFTNCVDQLGGAQKATPKQLFHLMKTKGLTLIHIKSHLQKYRI 197
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.163140200IPR017930Myb domain
SuperFamilySSF466891.79E-15141199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-25142198IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-23143198IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTTLCPYHYK KVDQTASNFP TYNILICCFY PSLPSYDYAM KLMMNEYKEF CPLSYLDSPF  60
HDFYVFEGCQ TFSEVESSFA SSNTNDRHHH FLISSSFHSP NPQEAQHQSN CSQEFDGENC  120
SWSCEELMPI NRNKKLKSSI VSKTRIKWTE ELHQRFTNCV DQLGGAQKAT PKQLFHLMKT  180
KGLTLIHIKS HLQKYRISQQ IQELSKGKSE RQINKKETMQ GSQNIGKQLM EVVRQQLHAQ  240
SSLNEQLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-17143199258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818351e-147LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBankLN7132581e-147LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652834.11e-154PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A0A0LEY11e-108A0A0A0LEY1_CUCSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.22e-30G2-like family protein