PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.180570.1

Common Name

Csa_1G181400, LOC101216951

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 23247.8 Da PI: 9.2491

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.180570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69	4.5e-22	13	61	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr + ++ rqvtfskRr g++ KA ELS LC+ae+a+++fss+gk+y++ Cucsa.180570.1 13 KRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61 5778899*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.151	5	65	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.0E-31	5	64	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.27E-34	6	77	No hit	No description
SuperFamily	SSF55455	7.98E-26	6	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-22	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-20	17	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-22	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-22	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKKSSGRRKI EIKRLDKNTT RQVTFSKRRV GLFNKAAELS LLCGAEIAIL LFSSRGKVYT 60 FGHPNVDALL DRFLTGNFLP PKPAEAYLPL PELNLDLCKA EAEFEIEKKR AVERLRNSER 120 FWWDEALERM RMDELKSFRS SLLQLRANVA GRLEKIRAMR MEDPPVTPSW SIVLGGENQC 180 AASFHVGENQ SFAMDWEEEI WG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	3e-15	6	77	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	3e-15	6	77	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	3e-15	6	77	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	3e-15	6	77	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3kov_B	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3kov_I	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3kov_J	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_A	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_B	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_C	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_D	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_I	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
3p57_J	5e-15	6	77	1	72	Myocyte-specific enhancer factor 2A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139610.1	1e-147	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0A0LW53	1e-146	A0A0A0LW53_CUCSA; Uncharacterized protein
STRING	XP_004162515.1	1e-147	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	5e-35	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Cucsa.180570.1
Entrez Gene	101216951

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]