PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.180580.1
Common NameCsa_1G181390, LOC101216718
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 446aa    MW: 50257 Da    PI: 5.5424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.180580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.65.9e-27305389186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev+ Li +r+++e+++r++ +k+  Wee+s+ m++ g++rs+k+Ckekwen+nk++k++  + k     + +tcpyf++l+
  Cucsa.180580.1 305 RWPQAEVQSLISLRTSLEHKFRATGSKGSIWEEISIEMQKMGYKRSAKKCKEKWENMNKYFKRTVVTGKAS-IANGKTCPYFQELD 389
                     8**************************************************************99888875.566679******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0089302364IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-4304362IPR009057Homeodomain-like
PfamPF138374.6E-20304389No hitNo description
CDDcd122035.12E-28304368No hitNo description
PROSITE profilePS500906.946305362IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDLFTADHRI PTSDNFPQHV APFPDPTDLL YAAPSSVFPP TDIINHLSNP PPPPQKLRPI  60
RCNGRSPAGS QAENIFDGAL RSFQCVSSSP EGGFSGDQLC VANIDPCQYF NSSAKDEKPE  120
VKHNGSFGDI IANDYFSEEE TKNGGSGAAI AAENLSRSRE EPQLDDDSCS TSDGGDAVFS  180
SKKHLSHKRK RTRRSLEHFV EKLVMKVMDK QEEMHRQLID MIEKKENERT VREEAWKQRE  240
IERIKRDEEL RAQETSRSLA IISLIQNLLG HEIQISRPAE NQCAEDDGGE SSIQKELKCD  300
PSGRRWPQAE VQSLISLRTS LEHKFRATGS KGSIWEEISI EMQKMGYKRS AKKCKEKWEN  360
MNKYFKRTVV TGKASIANGK TCPYFQELDI LYRNGVVNTG AVFDSTNTEN NSNAERSIDP  420
FHEDAFVEGE REHIKQEEAL DMVQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819290.0LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139609.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A0A0LYK70.0A0A0A0LYK7_CUCSA; Uncharacterized protein
STRINGXP_004139609.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-52Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]