PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.182020.1

Common Name

Csa_1G569510, LOC101208615

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 124aa MW: 14113.8 Da PI: 6.5184

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.182020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	134.6	3.1e-42	12	100	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +lPianv rimkk++P+++kisk+ak+ +qec+ efisfvtsea+++cq+e+r+t+ngdd++wa+++lG+++y+e+ +++l ++re+e+ Cucsa.182020.1 12 ELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER 100 69*************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-39	7	115	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-31	12	114	IPR009072	Histone-fold
Pfam	PF00808	9.7E-26	12	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.8E-12	40	58	No hit	No description
PRINTS	PR00615	7.8E-12	59	77	No hit	No description
PRINTS	PR00615	7.8E-12	78	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MENHHNGDEF LELPIANVER IMKKIIPQKG KISKEAKKKM QECANEFISF VTSEAAQRCQ 60 NENRRTLNGD DIYWAFGSLG LDNYAEASSK FLLNFREVER IKVDEKHKSK DNHGEIGETS 120 SPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-32	13	97	8	92	Transcription factor HapC (Eurofung)
4g92_B	2e-32	13	97	8	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	1e-119	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	1e-119	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135780.1	1e-87	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	2e-39	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A0A0LW12	3e-86	A0A0A0LW12_CUCSA; Uncharacterized protein
STRING	XP_004135780.1	4e-87	(Cucumis sativus)
STRING	XP_004157294.1	4e-87	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	9e-42	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Cucsa.182020.1
Entrez Gene	101208615

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]