PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.184670.2
Common NameCsa_6G411220, LOC101204702
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 267aa    MW: 29511.1 Da    PI: 8.4591
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.184670.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1475.7e-15187247463
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka.Lkkeleelkkevaklksev 63 
                      +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+e  + L++e+e++k+ +++lk+++
  Cucsa.184670.2 187 QQKQRRMIKNRESAARSRERKQAYTLELESLVTQLEQEHARlLREEAEHIKERSKQLKKKL 247
                     689***********************************9984599*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-10184249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.438186238IPR004827Basic-leucine zipper domain
PfamPF001703.2E-13186247IPR004827Basic-leucine zipper domain
CDDcd147072.11E-17188235No hitNo description
Gene3DG3DSA:1.20.5.1705.3E-13189247No hitNo description
SuperFamilySSF579591.31E-9189234No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASSNVEIAS TSKTNPDLPP QSSLSSISTI IADPSRSLVS ITMDDLLKNI YADAQTHNQN  60
PIIASSSSSI PSHELSSRTV DEVWKEIVSG GDQRRDPATD HEITLEDFLS KSGAVCDDDL  120
RVPVISEPVG GYAVDSTLNN NQLQIPSQQL EGPMVGGYAS GIDGRIVGVG RGKRRAVVEE  180
PVDKATQQKQ RRMIKNRESA ARSRERKQAY TLELESLVTQ LEQEHARLLR EEAEHIKERS  240
KQLKKKLIPI SEKRRPQRNL RRVNSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140103.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
TrEMBLA0A0A0KEF10.0A0A0A0KEF1_CUCSA; Uncharacterized protein
STRINGXP_004158618.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-35G-box binding factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]