PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.184670.5

Common Name

Csa_6G411220, LOC101204702

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 240aa MW: 26233.3 Da PI: 4.8949

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.184670.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.2e-13	187	231	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e +L e Cucsa.184670.5 187 QQKQRRMIKNRESAARSRERKQAYTLELESLVTQLEQEHARLLRE 231 689***********************************9998755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-7	184	237	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-11	186	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.404	186	231	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.28E-19	188	230	No hit	No description
SuperFamily	SSF57959	2.88E-10	188	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-13	189	231	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MASSNVEIAS TSKTNPDLPP QSSLSSISTI IADPSRSLVS ITMDDLLKNI YADAQTHNQN 60 PIIASSSSSI PSHELSSRTV DEVWKEIVSG GDQRRDPATD HEITLEDFLS KSGAVCDDDL 120 RVPVISEPVG GYAVDSTLNN NQLQIPSQQL EGPMVGGYAS GIDGRIVGVG RGKRRAVVEE 180 PVDKATQQKQ RRMIKNRESA ARSRERKQAY TLELESLVTQ LEQEHARLLR EEDFCMCRV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140103.1	1e-168	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
TrEMBL	A0A0A0KEF1	1e-167	A0A0A0KEF1_CUCSA; Uncharacterized protein
STRING	XP_004158618.1	1e-168	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	6e-28	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.184670.5
Entrez Gene	101204702

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]