PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.184810.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 223aa    MW: 25295.6 Da    PI: 8.6904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.184810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.1e-1561114155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 
                     +++ hn+rEr+RR ++ ++++ Lr+llP+ +   +skK  s  +i  k+v+YI  Lq
  Cucsa.184810.1  61 KKEEHNARERQRRLKLSHSYFSLRSLLPNaR---RSKKrWSAGTIIDKVVDYIPTLQ 114
                     6889*************************44...88888**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.23460113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1460128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1061118No hitNo description
PfamPF000103.3E-1261114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1361129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-966119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.1110.100.001136211IPR023299P-type ATPase, cytoplasmic domain N
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
ALLLPNEIIG SLVEDSTLLG LEENDHSIDG VLERENSKLF PPTSINVHNE EPSNSNKANA  60
KKEEHNARER QRRLKLSHSY FSLRSLLPNA RRSKKRWSAG TIIDKVVDYI PTLQKEIENM  120
NQKKQKLIKA KKNMSNNNER VSVSVEENEG LDQYYNNINP TVSIHQLCKG EVIIQICINP  180
RNNNNKLSNL IEKAEAEGLR IIGASTVSVS HDHQILTSHL HIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-152LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-152LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449406.11e-123PREDICTED: transcription factor bHLH100
TrEMBLA0A1S3BLZ51e-122A0A1S3BLZ5_CUCME; transcription factor bHLH100
STRINGXP_008449406.11e-123(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.11e-12bHLH family protein