PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.185740.1
Common NameCsa_6G425700, LOC101218845
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 161aa    MW: 18061 Da    PI: 4.5103
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.185740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.31.8e-139103594
           NF-YB   5 drflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     +++lP + v r++k+ l + ++   is  kd+     e +  fi ++++ a+d c++ kr+ti+++d+l al ++ f + v plk+ l ++r  +
  Cucsa.185740.1   9 NEELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSATANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKN 103
                     56799999999**99997644322355115555556666778*************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-319148IPR009072Histone-fold
PfamPF008083.7E-101180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.86E-2412119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEKKIGGGNE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATAN  60
DICKESKRQT IKAEDVLKAL EDMEFPELVR PLKASLDEFR RKNAGKKAAA SREKEAKKKR  120
KVEEPTVEGT DGESIEDVGN DDNDDNDEDE DEDENRASDD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199120RRKNAGKKAAASREKEAKKKRK
2111120REKEAKKKRK
3116121KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-82LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-82LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140162.11e-110PREDICTED: DNA polymerase epsilon subunit D isoform X2
TrEMBLA0A0A0KEV71e-109A0A0A0KEV7_CUCSA; Uncharacterized protein
STRINGXP_004140162.11e-110(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-41nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]