PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.185740.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 129aa    MW: 14615.7 Da    PI: 7.0962
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.185740.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB38.42.9e-12997588
           NF-YB  5 drflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                    +++lP + v r++k+ l + ++   is  kd+     e +  fi ++++ a+d c++ kr+ti+++d+l al ++ f + v plk+ l 
  Cucsa.185740.2  9 NEELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSATANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLD 97
                    5679999999***99997644322355115555556666778******************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-279122IPR009072Histone-fold
PfamPF008082.1E-101180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.83E-2212104IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEKKIGGGNE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATAN  60
DICKESKRQT IKAEDVLKAL EDMEFPELVR PLKASLDGEI QTQECWKEGS CLQRKRSEKE  120
EEGRRANS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-82LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-82LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140162.11e-64PREDICTED: DNA polymerase epsilon subunit D isoform X2
TrEMBLA0A0A0KEV73e-63A0A0A0KEV7_CUCSA; Uncharacterized protein
STRINGXP_004140162.15e-64(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-40nuclear factor Y, subunit B11