PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.185760.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 187aa    MW: 21908.1 Da    PI: 9.6467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.185760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.73.6e-43181492127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                      pGfrF Pt+eelv +yL+++++g + ++++vi+ vdiy++eP +L +    +++ ++++w+fF+k+++++a+g r+nr+t+  sgyWkatg+ +
  Cucsa.185760.1  18 LPGFRFFPTEEELVLFYLHNQLQGCRKDIHRVIPVVDIYEIEPFNLSRysgeRCRRDSEQWFFFVKQQERQARGGRANRTTSsgSGYWKATGSPT 112
                     59***************************99***************8545665666788********************8876689********* PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      v+s++++++g+kkt+vfy+g+ap+g+kt+W m+ey+
  Cucsa.185760.1 113 YVYSSENRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 149
                     ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.02217186IPR003441NAC domain
SuperFamilySSF1019412.35E-4318154IPR003441NAC domain
PfamPF023657.2E-2219149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDHDQVIIRE EEEEDQSLPG FRFFPTEEEL VLFYLHNQLQ GCRKDIHRVI PVVDIYEIEP  60
FNLSRYSGER CRRDSEQWFF FVKQQERQAR GGRANRTTSS GSGYWKATGS PTYVYSSENR  120
VIGVKKTMVF YRGKAPTGTK TKWKMNEYKA IQDIIPPHSP FSSTPIPQVI KFNLFVKMKI  180
LLLRLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2991497139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-133LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-133LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140261.11e-124PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR37e-63NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0A0KEE91e-123A0A0A0KEE9_CUCSA; Uncharacterized protein
STRINGXP_004140261.11e-124(Cucumis sativus)
STRINGXP_004171840.11e-124(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-65NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]