PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.186150.1
Common NameCsa_2G327500, LOC101209968
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 556aa    MW: 62290.5 Da    PI: 4.2666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.186150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.1e-5191361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdee+v +yL++kv+gk+l++ + i+ ++iyk+ePwdLp k k+k+++ ewyfFs+ dkky +++r+nrat++gyWk+tgkd++v 
  Cucsa.186150.1   9 LAPGFRFHPTDEEIVRYYLRRKVSGKSLRF-DPISVTEIYKSEPWDLPgKsKLKTRDLEWYFFSPLDKKYGNSSRTNRATEHGYWKTTGKDRPVR 102
                     579*************************99.89***************5347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++vg+kktLv+++grap+g +++Wvmheyrl
  Cucsa.186150.1 103 H-NSRVVGMKKTLVYHSGRAPRGARSNWVMHEYRL 136
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-617159IPR003441NAC domain
PROSITE profilePS5100557.2269159IPR003441NAC domain
PfamPF023658.3E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGSDSSTSLA PGFRFHPTDE EIVRYYLRRK VSGKSLRFDP ISVTEIYKSE PWDLPGKSKL  60
KTRDLEWYFF SPLDKKYGNS SRTNRATEHG YWKTTGKDRP VRHNSRVVGM KKTLVYHSGR  120
APRGARSNWV MHEYRLTDED LEKAGVVQDA YVLCRIFQKS GSGPKNGEQY GAPFIEEEWE  180
DDEELTLPGE EVVANEGLVD VDDYMHFEVD DIAQYFDGEL PGEYGQPPLI YPQETSNHVE  240
LPNGLVENDN KPEVCAGDTF ELQPSLNFFQ LPEQYGTGES SERDDRFAES SGNLAESSDN  300
FNQEDINYLL DEPYPSVPDD LALNEELFLE ANDLSNPVES DPSALDVLEE YFTFFDADDN  360
LQLAFDPSDL FDSEEPISSQ TTSEEKVSEV AEKEFMAAKQ SSVTFVNDAS TSKQDPKAIE  420
TSSDSKSPFF KGASYMLGNI PAPPAFASEY PSKDMAIRLN SAAQTSSSVH VTAGMIHIRN  480
LTSNGDLVND PLYGKNADVN LILSFAQHQH QVESDHQSEK NGTIVGSRGF LFFFLLFWVL  540
ILSVSFKVGS CIYSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4731659174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150380.10.0PREDICTED: NAC domain-containing protein 78-like isoform X2
SwissprotQ84K001e-156NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A0A0LK710.0A0A0A0LK71_CUCSA; Uncharacterized protein
STRINGXP_004150380.10.0(Cucumis sativus)
STRINGXP_004164210.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-131NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  7. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  8. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  9. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]