PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.186170.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 184aa    MW: 20135.4 Da    PI: 9.7864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.186170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00151032123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C ++F++   L  H ++H
  Cucsa.186170.1 10 YECKTCRRTFPSFQALGGHRSSH 32
                    99***********9999999987 PP
2zf-C2H2110.001499121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F +   L  H+r+H
  Cucsa.186170.1  99 HECSVCGADFISGQALGGHMRRH 121
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-10932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0971037IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-81032No hitNo description
SMARTSM003550.231032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801234IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-894121No hitNo description
PfamPF139121.6E-1198123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.22499121IPR007087Zinc finger, C2H2
SMARTSM003550.199121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
ASKAADGCAY ECKTCRRTFP SFQALGGHRS SHNHKNTPIT PTATPANHNS ISTTSPPNKQ  60
LQQRFNNNNN VSNQLDQVRM SRTVYYNNLK PANHRIKVHE CSVCGADFIS GQALGGHMRR  120
HRRGYGGGAS RDSSEIDGRC SKKQRSNLLC LDLNLNLPAP ENDKRENSGV VAMAATNLVD  180
CHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456545.11e-89PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3C3352e-88A0A1S3C335_CUCME; zinc finger protein ZAT5-like
STRINGXP_004164211.11e-134(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2468222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-20C2H2 family protein