PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.189540.3
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 201aa    MW: 23404.8 Da    PI: 11.1657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.189540.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-161156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
   Cucsa.189540.3 11 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 56
                     899*****************************.***********996 PP
2Myb_DNA-binding57.72.7e-1863107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ +
   Cucsa.189540.3  63 RKAFTEEEEERLMQAHEMYGNK-WAMIARLFP-GRTDNGVKNHWHVV 107
                      789*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.236657IPR017930Myb domain
SMARTSM007171.7E-131059IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-2811104IPR009057Homeodomain-like
PfamPF002491.8E-151156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-261264IPR009057Homeodomain-like
CDDcd001671.66E-111455No hitNo description
PROSITE profilePS5129426.02658112IPR017930Myb domain
SMARTSM007177.6E-1462110IPR001005SANT/Myb domain
PfamPF002493.4E-1563106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2165111IPR009057Homeodomain-like
CDDcd001674.73E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAASKSKVCG RGHWRPAEDT KLKELVGLYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR  60
INRKAFTEEE EERLMQAHEM YGNKWAMIAR LFPGRTDNGV KNHWHVVMAR NCRQHFSSYR  120
RSSRNLTHSL SIASSALPTP PLPPTRSLSR PNHLPFHLLP RPARERVDYT FRFQHEKGLR  180
NKQRNGSYII LQLQQNELKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32111127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818460.0LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138987.11e-119PREDICTED: transcription factor MYB44
SwissprotQ9LQX52e-69MY117_ARATH; Transcription factor MYB117
SwissprotQ9SEZ49e-70MY105_ARATH; Transcription factor MYB105
TrEMBLA0A0A0LHV61e-118A0A0A0LHV6_CUCSA; Uncharacterized protein
STRINGXP_004138987.11e-119(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.11e-72myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]