PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.193280.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 206aa    MW: 21838.9 Da    PI: 5.2856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.193280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-191564255
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +grWv+eI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  Cucsa.193280.1 15 RYVGVRQRP-SGRWVSEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 64
                    79*******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-291572IPR001471AP2/ERF domain
CDDcd000189.01E-211574No hitNo description
SuperFamilySSF541711.9E-201573IPR016177DNA-binding domain
PfamPF008473.9E-131564IPR001471AP2/ERF domain
PROSITE profilePS5103220.7981572IPR001471AP2/ERF domain
SMARTSM003801.2E-371578IPR001471AP2/ERF domain
PRINTSPR003678.2E-91627IPR001471AP2/ERF domain
PRINTSPR003678.2E-93854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGSCRKKASS RGHHRYVGVR QRPSGRWVSE IKDSLQKVRL WLGTFDTAEE AARAYDDAAR  60
ALRGSNARTN FEYLPPTSAD AGDANQPTES PFSFEEGCIE EDGFLGALKA KLFDGKGQRV  120
LQAVAQTTCC STTDNLNTNN NSNHNETIII QGGIHPPSSS SGQVDAVTAE LDSGGGSGWF  180
NNASAAVGLH AWPVVLGGLE EGGIGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1513711271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-155LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-155LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145964.11e-152PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLA0A0A0KQI41e-114A0A0A0KQI4_CUCSA; Uncharacterized protein
STRINGXP_004162970.11e-152(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-19related to AP2 11