PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.194800.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 78aa    MW: 8749.94 Da    PI: 10.8115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.194800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.6e-302676151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss
  Cucsa.194800.1 26 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 76
                    68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.97E-291877IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-401877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.451878IPR002100Transcription factor, MADS-box
CDDcd002654.10E-381977No hitNo description
PRINTSPR004042.7E-302040IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002074IPR002100Transcription factor, MADS-box
PfamPF003197.3E-282774IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-304055IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-305576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MFGPKEQNPL PPTPKSTMGR GRVEIKKIEN INSRQVTFSK RRNGLMKKAK ELSVLCDAEV  60
AIVVFSSTGR LYEFSSTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-201877160MEF2C
5f28_B4e-201877160MEF2C
5f28_C4e-201877160MEF2C
5f28_D4e-201877160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818781e-115LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132621e-115LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150520.22e-49PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9M2K81e-31AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A1S3C2E67e-47A0A1S3C2E6_CUCME; MADS-box transcription factor 23-like
STRINGXP_008455789.11e-47(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-34AGAMOUS-like 18