PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.195660.1
Common NameCsa_7G049230, LOC101210659
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 210aa    MW: 23023.7 Da    PI: 9.6912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.195660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-202069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+++++g
  Cucsa.195660.1 20 HFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDTAARQFRG 69
                    69*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.8412077IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-222078IPR016177DNA-binding domain
PfamPF008473.9E-132069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-322077IPR001471AP2/ERF domain
CDDcd000189.62E-322077No hitNo description
SMARTSM003801.4E-362083IPR001471AP2/ERF domain
PRINTSPR003674.0E-112132IPR001471AP2/ERF domain
PRINTSPR003674.0E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVANQKSLPS LSNNNAKDLH FRGVRKRPWG RYAAEIRDPT KKSRVWLGTF DTAEEAARAY  60
DTAARQFRGA KAKTNFPLPD DFIDVSPHNT NQSPSPTSTL DSSSSSTHEK TPSPEIARSY  120
GVGRTFPFIQ PQFLHGGGTV RPLLFTDVYG RAEFVAHGYP IRFDPATVDL TSRFTGGIQT  180
DTNSSSLVDF RPAKEILNLD LNLAPPVDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221678164ATERF1
3gcc_A1e-221678164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136839.11e-153PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A0A0K7421e-151A0A0A0K742_CUCSA; Ethylene-responsive element-binding protein
STRINGXP_004136839.11e-152(Cucumis sativus)
STRINGXP_004155468.11e-152(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-31erf domain protein 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]