PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.195790.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 284aa MW: 32613.9 Da PI: 10.1726

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.195790.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.6	8.7e-15	12	101	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +++ +Li a +++ +l+rg+l+ ++W+e+++++ ++r+f r+++qCk++++ l+++yk +k + ++ + + +p+f+ l+ Cucsa.195790.1 12 WTFDHTSTLIHAWGQRHLDLNRGSLRHKHWQEIADAVnsshgHDRKFFRTAIQCKNRIDTLKRKYKIEKVRIQESGGKYVCAWPFFSCLD 101 **************************************999*******************9999888877888889**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.9E-21	10	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MPSTVPLRED SWTFDHTSTL IHAWGQRHLD LNRGSLRHKH WQEIADAVNS SHGHDRKFFR 60 TAIQCKNRID TLKRKYKIEK VRIQESGGKY VCAWPFFSCL DDLIGNSHKA STSVSVSNSQ 120 SSPVTSPKLS LFSKVPVAPR SVTKKRRSTH VYRSFCDSYL RRDENLNEDE GKDGLDSDNS 180 LSGSSFKDRE VGYRKLAEAI RTITDIYERV EAEKQRQVLE LEMQRMQFMK DLEYQRMQLL 240 LDIHLKFQKI KRARRASEAA AGNNPRLHSG KEGFLWSLGL GNS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137029.2	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0A0K3T3	0.0	A0A0A0K3T3_CUCSA; Uncharacterized protein
STRING	XP_004155517.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	7e-57	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.195790.1