PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.196810.1

Common Name

Csa_1G004870, LOC101206846

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 121aa MW: 13969.7 Da PI: 9.8273

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.196810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	65	102	19	55
HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRake 55 F++ +yp+ +++ eLA+++gL+ +q WF N+R ++ Cucsa.196810.1 65 FHSqWPYPTDTDKVELAESTGLNRKQLNSWFINHRKRH 102 554479*****************************986 PP
2	ELK	42	1.9e-14	22	43	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKY+g+++sLkqEFs Cucsa.196810.1 22 ELKERLLRKYGGHISSLKQEFS 43 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03789	3.4E-11	22	43	IPR005539	ELK domain
SMART	SM01188	1.2E-7	22	43	IPR005539	ELK domain
PROSITE profile	PS51213	11.226	22	42	IPR005539	ELK domain
PROSITE profile	PS50071	11.823	42	105	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.39E-17	44	112	IPR009057	Homeodomain-like
SMART	SM00389	8.3E-9	45	109	IPR001356	Homeobox domain
CDD	cd00086	1.29E-10	46	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-24	47	105	IPR009057	Homeodomain-like
Pfam	PF05920	3.2E-15	62	101	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	80	103	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
NEAASEEDIS ARGEVAGNKD GELKERLLRK YGGHISSLKQ EFSKTKKKEG LPKEAKQILL 60 NWWNFHSQWP YPTDTDKVEL AESTGLNRKQ LNSWFINHRK RHWKLPSENM LSLRGSLDHE 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN685405	9e-72	LN685405.1 Cucumis melo genomic scaffold, unassembled_sequence32904.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138104.1	2e-83	PREDICTED: homeobox protein knotted-1-like 2 isoform X2
Refseq	XP_011656609.1	2e-83	PREDICTED: homeobox protein knotted-1-like 2 isoform X1
Swissprot	P46640	1e-39	KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBL	A0A0A0LU96	4e-82	A0A0A0LU96_CUCSA; Uncharacterized protein
STRING	XP_004155021.1	7e-83	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	4e-42	KNOTTED-like from Arabidopsis thaliana 2

Link Out ? help Back to Top
Phytozome	Cucsa.196810.1
Entrez Gene	101206846

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Zhang XL,Yang ZP,Zhang J,Zhang LG Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana. Int J Mol Sci, 2013. 14(7): p. 14872-91 [PMID:23863694] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Scofield S,Dewitte W,Murray JA STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1. Plant Signal Behav, 2018. [PMID:24776954] Lee JE,Lampugnani ER,Bacic A,Golz JF SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. Plant J., 2014. 80(1): p. 122-35 [PMID:25060324] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Li Z, et al. Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis. J Integr Plant Biol, 2016. 58(12): p. 959-970 [PMID:27273574] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]