PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.197550.1

Common Name

Csa_1G009580, LOC101213180

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 591aa MW: 63981.8 Da PI: 6.7927

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.197550.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	6.8e-30	267	326	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+ Cucsa.197550.1 267 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 326 58************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	253	328	IPR003657	WRKY domain
SuperFamily	SSF118290	1.11E-26	260	328	IPR003657	WRKY domain
PROSITE profile	PS50811	28.357	262	328	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	267	327	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	268	326	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKVPS MGDLEKPSME NLSVPSASNS 60 ITWKEEDDEQ RHEERMKRTK VEMREVKEEN ERLKKYLDEI MKDYETLKRK FHEIKNNHDD 120 QIREEGKKST QTSGSTINNN NNDNDDDHQV EAEVDDMVSL RLGSRFSTHH QNKNTSSSSL 180 SLTNKILDLK QDYVIQTPST IDHSIHSPTH SEPKDQEEAG QTTWPPSKMP KPGGLPSPAT 240 GEDEVSQQSP PKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTGAPTCP 300 VRKQVQRSVD DISILITTYE GTHNHPLPVS AMAMASTTSA AASMLLSGPS SSTSSQPGLN 360 HSFTAPATAA NLHGMNMYLS NNTSSKQFYL PNSSMLSSSL NHPTITLDLT SNPPSTSSSS 420 PFHKIPLINN NNYPPKYPFT NLDFASSQPN FMSWNNNNNA YSNITKNNAI IGMGSDFAKQ 480 LPLHTNIYQA CLQQLSKPST TPQPPALPDT IAAATKAITS DPSFQSALAA ALSSIIGGGE 540 TGPSVSSLVV GGGGGGGQGS MGFEAAKSLT CSTSKSTPSS SPGDSRDNGK *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKVPS MGDLEKPSME NLSVPSASNS  60
ITWKEEDDEQ RHEERMKRTK VEMREVKEEN ERLKKYLDEI MKDYETLKRK FHEIKNNHDD  120
QIREEGKKST QTSGSTINNN NNDNDDDHQV EAEVDDMVSL RLGSRFSTHH QNKNTSSSSL  180
SLTNKILDLK QDYVIQTPST IDHSIHSPTH SEPKDQEEAG QTTWPPSKMP KPGGLPSPAT  240
GEDEVSQQSP PKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTGAPTCP  300
VRKQVQRSVD DISILITTYE GTHNHPLPVS AMAMASTTSA AASMLLSGPS SSTSSQPGLN  360
HSFTAPATAA NLHGMNMYLS NNTSSKQFYL PNSSMLSSSL NHPTITLDLT SNPPSTSSSS  420
PFHKIPLINN NNYPPKYPFT NLDFASSQPN FMSWNNNNNA YSNITKNNAI IGMGSDFAKQ  480
LPLHTNIYQA CLQQLSKPST TPQPPALPDT IAAATKAITS DPSFQSALAA ALSSIIGGGE  540
TGPSVSSLVV GGGGGGGQGS MGFEAAKSLT CSTSKSTPSS SPGDSRDNGK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	254	328	1	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659995.1	0.0	PREDICTED: probable WRKY transcription factor 61 isoform X1
TrEMBL	A0A0A0LRM6	0.0	A0A0A0LRM6_CUCSA; Uncharacterized protein
STRING	XP_008453182.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-54	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Cucsa.197550.1
Entrez Gene	101213180

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]