PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.197550.2

Common Name

Csa_1G009580, LOC101213180

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 562aa MW: 60836.3 Da PI: 7.1409

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.197550.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	238	297	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+ Cucsa.197550.2 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 297 58************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-30	224	299	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-26	231	299	IPR003657	WRKY domain
PROSITE profile	PS50811	28.357	233	299	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	238	298	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	239	297	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKDDE QRHEERMKRT KVEMREVKEE 60 NERLKKYLDE IMKDYETLKR KFHEIKNNHD DQIREEGKKS TQTSGSTINN NNNDNDDDHQ 120 VEAEVDDMVS LRLGSRFSTH HQNKNTSSSS LSLTNKILDL KQDYVIQTPS TIDHSIHSPT 180 HSEPKDQEEA GQTTWPPSKM PKPGGLPSPA TGEDEVSQQS PPKKARVCVR ARCDTPTMND 240 GCQWRKYGQK IAKGNPCPRA YYRCTGAPTC PVRKQVQRSV DDISILITTY EGTHNHPLPV 300 SAMAMASTTS AAASMLLSGP SSSTSSQPGL NHSFTAPATA ANLHGMNMYL SNNTSSKQFY 360 LPNSSMLSSS LNHPTITLDL TSNPPSTSSS SPFHKIPLIN NNNYPPKYPF TNLDFASSQP 420 NFMSWNNNNN AYSNITKNNA IIGMGSDFAK QLPLHTNIYQ ACLQQLSKPS TTPQPPALPD 480 TIAAATKAIT SDPSFQSALA AALSSIIGGG ETGPSVSSLV VGGGGGGGQG SMGFEAAKSL 540 TCSTSKSTPS SSPGDSRDNG K*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKDDE QRHEERMKRT KVEMREVKEE  60
NERLKKYLDE IMKDYETLKR KFHEIKNNHD DQIREEGKKS TQTSGSTINN NNNDNDDDHQ  120
VEAEVDDMVS LRLGSRFSTH HQNKNTSSSS LSLTNKILDL KQDYVIQTPS TIDHSIHSPT  180
HSEPKDQEEA GQTTWPPSKM PKPGGLPSPA TGEDEVSQQS PPKKARVCVR ARCDTPTMND  240
GCQWRKYGQK IAKGNPCPRA YYRCTGAPTC PVRKQVQRSV DDISILITTY EGTHNHPLPV  300
SAMAMASTTS AAASMLLSGP SSSTSSQPGL NHSFTAPATA ANLHGMNMYL SNNTSSKQFY  360
LPNSSMLSSS LNHPTITLDL TSNPPSTSSS SPFHKIPLIN NNNYPPKYPF TNLDFASSQP  420
NFMSWNNNNN AYSNITKNNA IIGMGSDFAK QLPLHTNIYQ ACLQQLSKPS TTPQPPALPD  480
TIAAATKAIT SDPSFQSALA AALSSIIGGG ETGPSVSSLV VGGGGGGGQG SMGFEAAKSL  540
TCSTSKSTPS SSPGDSRDNG K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	225	299	1	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011660002.1	0.0	PREDICTED: probable WRKY transcription factor 61 isoform X2
TrEMBL	A0A0A0LRM6	0.0	A0A0A0LRM6_CUCSA; Uncharacterized protein
STRING	XP_004138298.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-55	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Cucsa.197550.2
Entrez Gene	101213180

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]