PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197630.3
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 248aa    MW: 27623.7 Da    PI: 6.7424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197630.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000293987254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  + erE+  R+++N+ f  L   l        + + Ka+iL +A + +k+L
  Cucsa.197630.3 39 KIHKAEREKLKREHLNDLFLDLANALELT----EPNNGKASILSEASRLLKDL 87
                    567889********************996....57799999**9999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.95E-43587No hitNo description
PROSITE profilePS5088810.1053787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-538106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-938101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVSEVPSKPV VETDAPVMAS MLHLVICDRL ANQVKVPKKI HKAEREKLKR EHLNDLFLDL  60
ANALELTEPN NGKASILSEA SRLLKDLFGQ IECLRKEHAL LLSESRYVDI EKTELREETS  120
ALASQIEKLQ SELQSRAVHS KPDLNVTPPS EFPQQGTTVQ HFSGECLGLP VMEPTLQQTH  180
AVFIVPVRPD LPSYPATDAT HAPIMPTSHV SKPHARYPTP ADSWPAGLLK FQARQHFGNL  240
RQKEEMV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-173LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-173LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660048.11e-156PREDICTED: transcription factor bHLH47
SwissprotQ9SN747e-59BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A0A0LSA01e-154A0A0A0LSA0_CUCSA; Uncharacterized protein
STRINGXP_004138160.11e-155(Cucumis sativus)
STRINGXP_004154976.11e-155(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-51bHLH family protein
Publications ? help Back to Top
  1. Rodríguez-Celma J, et al.
    The transcriptional response of Arabidopsis leaves to Fe deficiency.
    Front Plant Sci, 2013. 4: p. 276
    [PMID:23888164]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  4. Li H,Wang L,Yang ZM
    Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
    Gene, 2015. 554(1): p. 16-24
    [PMID:25300251]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]