PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.197700.1

Common Name

Csa_1G009740

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 204aa MW: 23562.6 Da PI: 8.4506

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.197700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.2	2.2e-25	64	114	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++++y+++pi++AAkeL+v+lT+LK++CR++GI RWPhRk+ s+ Cucsa.197700.1 64 SKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSI 114 57899*******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	50	134	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-20	67	114	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDNGVFGVVE EEPPLLLLEC GENEEKEEMV VSNKKGKKRS MRLKSENECS NNNSNNNGSC 60 YSSSKMLSRK VIQEYYYMPI TQAAKELNVG LTLLKKRCRE LGIGRWPHRK LMSIQTLIKN 120 IKELIEKGDD EEGNGSENYK LKNVLEILEN EKKLMEERPD LQLEDNTKRL RQACFKANYK 180 KRKLSGLIIN NNNNNNIDDI NSQX

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-128	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-128	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011660335.1	1e-142	PREDICTED: protein RKD1-like
Swissprot	Q9M9U9	4e-50	RKD1_ARATH; Protein RKD1
TrEMBL	A0A0A0LP42	1e-140	A0A0A0LP42_CUCSA; Uncharacterized protein
STRING	XP_004155063.1	1e-143	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-50	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.197700.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]