PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.197750.1

Common Name

Csa_1G009790, LOC101222224

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 468aa MW: 51099.3 Da PI: 5.5647

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.197750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	117	177	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Cucsa.197750.1 117 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSA 177 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	113	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	119	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MLEVKDPPIK IFGKEIQLPP DCEVSLIETD DDDSDSFSDK QPGDGALLKD VGKVSESSAG 60 KEETLHDSED SACVQTANEA HMNPEVVSMD ENDKLETSKP EKEQNGAPNS KEKLKKPDKI 120 LPCPRCNSME TKFCYYNNYN VNQPRHFCKA CQRYWTEGGT MRNVPVGAGR RKNKNSASHY 180 RQITISEALQ AAQIDVPNGI NCLATKSNGR VLNFSVNAPV CESMSTVLNP AGRKVLNGTR 240 NEFYRPDDQG IKAPCKGGET GDDCSSASSV TMSSSMEEGA RRCPQEPQMQ NINGFPPQIP 300 YLPGVPWPCS WNAPMPPPAF CPPGVPLPFY PATYWSCGVP GAWNIPWFPP QPCSQNSGAN 360 SPTLGKHSRD VGDKLQADNS EKEEPPKQKN GSVLIPKTLR IDDPNEAAKS SIWETLGIKN 420 DSIKAVDLSK VFQSKGEQKN SVSEMLSPVL QANPAALSRS ITFHERS*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MLEVKDPPIK IFGKEIQLPP DCEVSLIETD DDDSDSFSDK QPGDGALLKD VGKVSESSAG  60
KEETLHDSED SACVQTANEA HMNPEVVSMD ENDKLETSKP EKEQNGAPNS KEKLKKPDKI  120
LPCPRCNSME TKFCYYNNYN VNQPRHFCKA CQRYWTEGGT MRNVPVGAGR RKNKNSASHY  180
RQITISEALQ AAQIDVPNGI NCLATKSNGR VLNFSVNAPV CESMSTVLNP AGRKVLNGTR  240
NEFYRPDDQG IKAPCKGGET GDDCSSASSV TMSSSMEEGA RRCPQEPQMQ NINGFPPQIP  300
YLPGVPWPCS WNAPMPPPAF CPPGVPLPFY PATYWSCGVP GAWNIPWFPP QPCSQNSGAN  360
SPTLGKHSRD VGDKLQADNS EKEEPPKQKN GSVLIPKTLR IDDPNEAAKS SIWETLGIKN  420
DSIKAVDLSK VFQSKGEQKN SVSEMLSPVL QANPAALSRS ITFHERS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138169.2	0.0	PREDICTED: cyclic dof factor 3
Swissprot	Q8LFV3	1e-112	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0A0LP47	0.0	A0A0A0LP47_CUCSA; AOBP (Ascorbate oxidase promoter-binding protein)
STRING	XP_004154970.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Cucsa.197750.1
Entrez Gene	101222224

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]