PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.199800.2

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 421aa MW: 47248.4 Da PI: 7.3014

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.199800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.6e-11	114	155	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L Cucsa.199800.2 114 AKTMRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDL 155 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-7	111	177	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	113	157	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-8	114	155	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.22E-7	115	157	No hit	No description
CDD	cd14708	2.97E-21	115	166	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.7E-8	116	158	No hit	No description
PROSITE pattern	PS00036	0	118	133	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-31	198	272	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MFPSWPIRFQ QTPTLGGGSK SESTDSGSAN INNTLTSKIE LEMESESPIS RRTCSSNQGL 60 FDQNHHHHLL HLQHLQSEFE DDALRTEPSS QQNQSPPKEK RKGGGSTSER QLDAKTMRRL 120 AQNREAARKS RLRKKAYIQQ LESSRIKLSQ LEQDLHRARS QGLFLGACGG VMGGNISSGA 180 AIFDMEYARW LDEDHRLMAE LRAALQGHLP DGDLRAIVDS YISHYDEIFH LKGVAAKSDV 240 FHLITGMWMT PAERCFLWIG GFRPSKLIEM LVPQIDTLTD QQALGICNLQ RSSQETEDAL 300 YQGLEQLQHS LIITIAGTAV VDGINHMALA AGKLSNLEGF IRQADMLRQQ TLHQLHRILT 360 VRQAARCFVV IGEYYGRLRA LSSLWVSRPR ESSCLNDESS CQTTTELQMI QNSHTHFPNF 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MFPSWPIRFQ QTPTLGGGSK SESTDSGSAN INNTLTSKIE LEMESESPIS RRTCSSNQGL  60
FDQNHHHHLL HLQHLQSEFE DDALRTEPSS QQNQSPPKEK RKGGGSTSER QLDAKTMRRL  120
AQNREAARKS RLRKKAYIQQ LESSRIKLSQ LEQDLHRARS QGLFLGACGG VMGGNISSGA  180
AIFDMEYARW LDEDHRLMAE LRAALQGHLP DGDLRAIVDS YISHYDEIFH LKGVAAKSDV  240
FHLITGMWMT PAERCFLWIG GFRPSKLIEM LVPQIDTLTD QQALGICNLQ RSSQETEDAL  300
YQGLEQLQHS LIITIAGTAV VDGINHMALA AGKLSNLEGF IRQADMLRQQ TLHQLHRILT  360
VRQAARCFVV IGEYYGRLRA LSSLWVSRPR ESSCLNDESS CQTTTELQMI QNSHTHFPNF  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-122	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-122	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654412.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Swissprot	Q93XM6	1e-177	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3CEU5	0.0	A0A1S3CEU5_CUCME; transcription factor HBP-1b(C38)-like
STRING	XP_004139481.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-176	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.199800.2

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]