PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.199850.1

Common Name

Csa_1G160590, LOC101208459

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 225aa MW: 25632.4 Da PI: 9.0405

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.199850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	67	86	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+ksF+r n++ H+ Cucsa.199850.1 67 FACSICNKSFNRYNNMQMHM 86 78*****************9 PP
2	zf-C2H2	12.1	0.00061	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgks k + ++H +++ Cucsa.199850.1 151 FMCRKCGKSLAVKGDWRTHEKNC 173 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.12E-6	53	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-6	67	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	1.7E-4	67	86	No hit	No description
SMART	SM00355	0.092	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	67	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	114	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-4	147	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	110	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEKVEVGLHI GLPNVGDVSY FGDEKNMNVC VKKEEIHSLK KSFSNFNTQG RFWIPTQAQI 60 LVGPMQFACS ICNKSFNRYN NMQMHMWGHG SEYRKGPESL RGTQPAAMLR LPCYCCAQGC 120 KNNINHPRAK PLKDFRTLQT HYKRKHGCKP FMCRKCGKSL AVKGDWRTHE KNCGKLWYCS 180 CGSDFKHKRS LKDHIRSFGK GHSPCSSLDD ECLTGSDDQE DHFC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	0.0	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139578.1	1e-169	PREDICTED: zinc finger protein WIP3
Swissprot	Q8W030	1e-103	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	A0A0A0LVD5	1e-168	A0A0A0LVD5_CUCSA; Uncharacterized protein
STRING	XP_004139578.1	1e-169	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	1e-105	WIP domain protein 4

Link Out ? help Back to Top
Phytozome	Cucsa.199850.1
Entrez Gene	101208459

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]