PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.200860.1
Common NameCsa_6G227540, LOC101205926
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 253aa    MW: 28042.8 Da    PI: 7.5845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.200860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-1261107354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +  Lr+l+P       kK++Ka+ L +++ +++ L
  Cucsa.200860.1  61 KNHSEAERRRRARINDHLGILRSLVPGG-----KKMDKATLLAEVISHLNVL 107
                     58************************87.....8************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.68258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1061107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1362115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1462114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-472110No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-5145197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGHFSQIYSY DGFCANSASM RNGSVSTSSL VLDSERDELV EAPLKLESKG VPAERSAAAL  60
KNHSEAERRR RARINDHLGI LRSLVPGGKK MDKATLLAEV ISHLNVLKRA AAEVSDAHII  120
PEESDEITVE QEDGFNGVPY SIRASLCCDY KPGLLPDLRR ALHALDLIIQ RAEIATLNGR  180
MKNVFVLTSC KEGNIETTEL RRFLETSVHQ AIKSVLNKFS DPQEFSFMTF PNKRRRISLF  240
NASSSSSMGD FW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149373.10.0PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBLA0A0A0KFN80.0A0A0A0KFN8_CUCSA; Uncharacterized protein
STRINGXP_004167587.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-34bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]