PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.201140.1

Common Name

Csa_4G043960, LOC101216097

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 264aa MW: 28663.7 Da PI: 6.5901

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.201140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	101.2	1.9e-31	100	161	6	67
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 +sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa+krr+r+ + ++sk+ +++ Cucsa.201140.1 100 TSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDT 161 69*********************************************988888777766654 PP
2	DUF702	85.2	1.6e-26	164	224	94	154
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +++ l++ ++P+ev ++avfrcvr++s+d+ ++++aYqtav+igGh+fkGiLyd+G+e+ Cucsa.201140.1 164 HPTSSGLDMGNFPTEVTTPAVFRCVRMTSLDETDDQYAYQTAVNIGGHIFKGILYDHGPEQ 224 55667788999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-53	100	223	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.3E-28	101	143	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-25	175	222	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAGFFPLDGG GSGGRVPNYH FPTPTTGGEI IHPTTEGLFW YKNYERLETW EGEEQQQQQQ 60 PAQEQGGEGF VYSGDESPAR SSLVMVRSGR GGGGGGGPVT SCQDCGNQAK KDCVHMRCRT 120 CCKSRGFECE THVKSTWVPA SKRRDRHLRS DGLNSKRPKD THYHPTSSGL DMGNFPTEVT 180 TPAVFRCVRM TSLDETDDQY AYQTAVNIGG HIFKGILYDH GPEQPPPPPS SSSAALLDPT 240 PPYPTPLSTY ITAGTQFFLP PSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682015	0.0	LN682015.1 Cucumis melo genomic scaffold, unanchored_scaffold00177.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146546.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-54	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A0A0KUG2	0.0	A0A0A0KUG2_CUCSA; Uncharacterized protein
STRING	XP_004167428.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24705	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	3e-51	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	Cucsa.201140.1
Entrez Gene	101216097

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]