PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.201280.1

Common Name

Csa_4G038810, LOC101215476

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 406aa MW: 43254.3 Da PI: 9.1228

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.201280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cucsa.201280.1 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	11.8	0.00074	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + ks+ k H + + Cucsa.201280.1 133 WKCEKCSKKYAVKSDWKAHSKIC 155 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.85E-6	56	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.2E-5	57	79	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.85E-6	128	153	No hit	No description
SMART	SM00355	120	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MLTDLENSAE VSIASTVNQL PPTKSAVKKK RSLPGMPDPD AEVIALSPKT LLATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVKKKVYVC PEPSCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK KYAVKSDWKA HSKICGTREY KCDCETVFSR RDSFITHRAF 180 CDVLTKEVAG SLSPAAAEIP NLESDSQVQR PSGSSSPPSS APPLPAGTAP VSVALPPSTD 240 TMSSIASIEN KASPENPPPL IGEAQDRTSL TGNSGSSNTT ISSTNATVLA SLFASSAASL 300 SLQPPQPPAF CDLLRAMARP DRATEIAPPL VFEPLSLCLS TDTESSLFRT GIQDCRPYVP 360 PTPPAMSATG LLQKAAQMGA AAAGASVFRG LGLSSSPSSA QQGSL*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MLTDLENSAE VSIASTVNQL PPTKSAVKKK RSLPGMPDPD AEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVKKKVYVC PEPSCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK KYAVKSDWKA HSKICGTREY KCDCETVFSR RDSFITHRAF  180
CDVLTKEVAG SLSPAAAEIP NLESDSQVQR PSGSSSPPSS APPLPAGTAP VSVALPPSTD  240
TMSSIASIEN KASPENPPPL IGEAQDRTSL TGNSGSSNTT ISSTNATVLA SLFASSAASL  300
SLQPPQPPAF CDLLRAMARP DRATEIAPPL VFEPLSLCLS TDTESSLFRT GIQDCRPYVP  360
PTPPAMSATG LLQKAAQMGA AAAGASVFRG LGLSSSPSSA QQGSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	129	189	3	63	Zinc finger protein JACKDAW
5b3h_F	1e-32	129	189	3	63	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149169.1	0.0	PREDICTED: protein indeterminate-domain 1-like
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0A0KWK7	0.0	A0A0A0KWK7_CUCSA; Uncharacterized protein
STRING	XP_004149169.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Cucsa.201280.1
Entrez Gene	101215476

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]