PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201950.1
Common NameCsa_5G139630, LOC101215374
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 269aa    MW: 29436 Da    PI: 6.3699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-2089140156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+++GVr+++ +g+W+AeIrd       r r +lg+++taeeAa  ++ a++kl+g+
  Cucsa.201950.1  89 SKFRGVRRRP-WGKWAAEIRDsG----SRVRLWLGTYDTAEEAAMVYDSAALKLRGP 140
                     79********.**********33....35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-2289148IPR016177DNA-binding domain
PfamPF008474.0E-1489139IPR001471AP2/ERF domain
CDDcd000181.73E-3289149No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3090148IPR001471AP2/ERF domain
PROSITE profilePS5103223.57890147IPR001471AP2/ERF domain
SMARTSM003803.1E-3790153IPR001471AP2/ERF domain
PRINTSPR003673.3E-1091102IPR001471AP2/ERF domain
PRINTSPR003673.3E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEVPTILRRK PISEPHGRSS TGSRIVRISM ADPDATDSSS SDEDTLNYTS RRVKRYEIEF  60
SIGMAGDGDG CGDRKLKRKR KRKAVGNVSK FRGVRRRPWG KWAAEIRDSG SRVRLWLGTY  120
DTAEEAAMVY DSAALKLRGP AALTNFPTHP PPPSTGQEPS SPTNISSPTS VLHRTHFTEC  180
SSSYRAVIES PVVDYCPFSD DIFKSILLES PLFPEYQSTL ITEAPWIDAG GGARSGDLVV  240
AAAGSDERVE DHDCFEEILM GSDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20891471372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279DRKLKRKR
27381RKLKRKRKR
37682KRKRKRK
47782RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145980.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUE32e-38CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0A0KJI10.0A0A0A0KJI1_CUCSA; Uncharacterized protein
STRINGXP_004145980.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2449833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-29cytokinin response factor 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  6. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]