PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.202790.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 96aa MW: 11064.9 Da PI: 10.3965

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.202790.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.1	2e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ Cucsa.202790.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFG 58 79**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.403	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.37E-44	2	72	No hit	No description
SuperFamily	SSF55455	3.4E-34	2	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFGSA 60 GTSKTLERYQ RCCFSPQHNF AERETQVLLL IPFFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-22	1	69	1	69	MEF2 CHIMERA
6byy_B	5e-22	1	69	1	69	MEF2 CHIMERA
6byy_C	5e-22	1	69	1	69	MEF2 CHIMERA
6byy_D	5e-22	1	69	1	69	MEF2 CHIMERA
6bz1_A	5e-22	1	90	1	85	MEF2 CHIMERA
6bz1_B	5e-22	1	90	1	85	MEF2 CHIMERA
6bz1_C	5e-22	1	90	1	85	MEF2 CHIMERA
6bz1_D	5e-22	1	90	1	85	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC899706	1e-138	KC899706.1 Cucumis sativus AGL6-like MADS-box protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460143.1	8e-56	PREDICTED: agamous-like MADS-box protein AGL6
Refseq	XP_008460144.1	8e-56	PREDICTED: agamous-like MADS-box protein AGL6
Swissprot	Q8LLR1	1e-49	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A0A0KCU5	1e-53	A0A0A0KCU5_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3CBY8	2e-54	A0A1S3CBY8_CUCME; agamous-like MADS-box protein AGL6
TrEMBL	W5REE7	4e-55	W5REE7_CUCSA; AGL6-like MADS-box protein (Fragment)
STRING	XP_004153375.1	1e-56	(Cucumis sativus)
STRING	XP_004174115.1	6e-57	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	2e-42	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	Cucsa.202790.1

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]