PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.205050.1
Common NameCsa_7G407660
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 130aa    MW: 15452 Da    PI: 9.1922
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.205050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-13756554
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                    k+ +r+q+NRe+ArrsR RK+++ e+L+++v eL+  N++  + ++  ++
  Cucsa.205050.1  7 KKMKRMQSNRESARRSRMRKQKRFENLTREVRELQIVNSRIVESVNGREE 56
                    899********************************999988877766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-9370IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358568IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-8660No hitNo description
SuperFamilySSF579595.98E-10761No hitNo description
PfamPF001703.6E-11757IPR004827Basic-leucine zipper domain
CDDcd147026.38E-12852No hitNo description
PROSITE patternPS0003601025IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MIDDVKKKMK RMQSNRESAR RSRMRKQKRF ENLTREVREL QIVNSRIVES VNGREEAMVE  60
IESMNNFLRV EAIEMTCRLR ALDLMLQIQD DANVVVVDVR DPWLEPWQLN QQRQPPPPLM  120
AAYYDMFLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410VKKKMKR
21926RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-173LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-173LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451653.11e-79PREDICTED: bZIP transcription factor 53-like
TrEMBLA0A0A0K6D05e-86A0A0A0K6D0_CUCSA; Uncharacterized protein
STRINGXP_008451653.16e-79(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2471833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.14e-19basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]