PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.205230.1
Common NameCsa_7G405980, LOC101220495
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 133aa    MW: 14264.4 Da    PI: 10.0025
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.205230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.8e-202054135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C++C++t TplWR gp g+++LCnaCG++yrk+++
  Cucsa.205230.1 20 CVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKM 54
                    ********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.95E-141257No hitNo description
PROSITE profilePS5011412.5711450IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-121472IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-151855IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.66E-141951No hitNo description
PROSITE patternPS0034402045IPR000679Zinc finger, GATA-type
PfamPF003204.3E-172053IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTAVSKEGLL ELEAEKQRAC VHCRATRTPL WRAGPAGPRS LCNACGIRYR KMKMNSNNNG  60
GVNNNSNNKM GKGKKMGGSG GSLKVRVVRL GREIMVHRPT TAMEDDNEVA ESIGEEEQTA  120
ALLLMALSSG YV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818032e-64LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132552e-64LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659382.12e-92PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0A0K6B14e-91A0A0A0K6B1_CUCSA; Uncharacterized protein
STRINGXP_004136159.13e-89(Cucumis sativus)
STRINGXP_004162445.13e-89(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-22GATA transcription factor 15
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]