PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.207390.1

Common Name

Csa_1G088440, LOC101222021

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 182aa MW: 20308.2 Da PI: 6.7605

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.207390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.8e-40	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C l pyfp+ +p kf ++h++FGasn++kll++lpe++r da++s+vyeA r+rdP+yG++g i++lq+q++ l+ ela Cucsa.207390.1 19 PCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELA 113 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Cucsa.207390.1 114 KAQAE 118 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-39	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
KSAETNTAST AVVVGSSSPC AACKILRRRC RENCELGPYF PSMEPLKFTI AHRVFGASNI 60 IKLLQDLPES QRGDAVNSMV YEASTRIRDP IYGCAGSIFH LQRQINDLQG ELAKAQAEVL 120 RMHCQQANLM TLICKELGQM PQPPMHDHQS LNDPYNIASP QSYHSYSYLF EECNVLEPMW 180 T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-42	15	141	7	123	LOB family transfactor Ramosa2.1
5ly0_B	8e-42	15	141	7	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-90	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-90	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147298.1	1e-133	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-60	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0A0LUS4	1e-131	A0A0A0LUS4_CUCSA; Uncharacterized protein
STRING	XP_004161318.1	1e-135	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24500	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-62	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Cucsa.207390.1
Entrez Gene	101222021

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]