PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.212720.1
Common NameCsa_1G467100
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28979.3 Da    PI: 9.2472
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.212720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-313382150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cucsa.212720.1 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82
                    79***********************************************8 PP
2K-box110.61.7e-361031976100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        ++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek++++iRs+Knell+++ie++qk+e el+ +n+ +r+k++e
  Cucsa.212720.1 103 AMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIAE 197
                     44599***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3752585IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-412584IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-332699IPR002100Transcription factor, MADS-box
CDDcd002655.03E-432695No hitNo description
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-332747IPR002100Transcription factor, MADS-box
PfamPF003199.7E-273481IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-334762IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-336283IPR002100Transcription factor, MADS-box
PfamPF014863.4E-26108195IPR002487Transcription factor, K-box
PROSITE profilePS5129714.757111201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCYEEEDEE SGVVGLRRSS SSSRTGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  60
VLCDAEVALI VFSSRGRLYE YANNSVRATI SRYKKAYSDP STAMTVSEAN TQFYQQESAK  120
LRAQIGNLQN LNRHLLGESI SSLSVKDLKS LEVKLEKGIS RIRSRKNELL FSEIEYMQKR  180
EIELHTNNQL IRAKIAETER SQQNTNASNN NGIATRRGEE GSMGTNLEDN NHHQYDSTNY  240
FDPHHNHPIS LQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-2226100275Myocyte-specific enhancer factor 2B
1tqe_Q9e-2226100275Myocyte-specific enhancer factor 2B
1tqe_R9e-2226100275Myocyte-specific enhancer factor 2B
1tqe_S9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_A9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_B9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_C9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_D9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_E9e-2226100275Myocyte-specific enhancer factor 2B
6c9l_F9e-2226100275Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX978010.0X97801.1 C.sativus CUS1 mRNA for put. transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267656.10.0floral homeotic protein AGAMOUS-like
RefseqXP_011651593.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ435851e-103AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLQ434220.0Q43422_CUCSA; Putative transcription factor
STRINGXP_004147393.10.0(Cucumis sativus)
STRINGXP_004169579.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]
  5. Perl-Treves R,Kahana A,Rosenman N,Xiang Y,Silberstein L
    Expression of multiple AGAMOUS-like genes in male and female flowers of cucumber (Cucumis sativus L.).
    Plant Cell Physiol., 1998. 39(7): p. 701-10
    [PMID:9729894]