PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.213120.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 295aa    MW: 33280.4 Da    PI: 5.8031
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.213120.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.9e-1624114186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  ++  +l+rg+l++++W++v++ +       ++ +r+ +qCk++++ ++k+yk ++++ +  + + +s++p++ +l+
  Cucsa.213120.2  24 CWSEDATSTLIDAWGRRFLDLNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFVSSWPFYARLD 114
                     7**************************************9999999*************************99999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2522116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGDLTDSLTP SSANSRQLPI REDCWSEDAT STLIDAWGRR FLDLNRGNLR QKDWQDVADS  60
VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFVSSWPFY ARLDELIGPT  120
VSMKKPSSPP LALPLPFRKT PPPSAAASSA VVAVSQKRSA AAMDHVSFRR NYSAMAAAAA  180
AVALSEEEED EEEEEEEEER VSDDEEAEGE GMSRLARAIK RFGEVYERVE AEKVRQMVEL  240
EKQRMQFAKD LELQRMHMFM ETQVQLERIK RGKKSTPSGN PPDEVYILNT MKDM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657735.11e-179PREDICTED: trihelix transcription factor ASIL1-like isoform X2
TrEMBLA0A0A0LX811e-169A0A0A0LX81_CUCSA; Uncharacterized protein
STRINGXP_004151226.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-41sequence-specific DNA binding transcription factors