PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.217940.1

Common Name

Csa_7G062840, LOC101203707

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 1093aa MW: 121584 Da PI: 5.7395

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.217940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.7	4.2e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++ k+rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+++vl+cyYah+een++fqr Cucsa.217940.1 20 VEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQR 114 5669***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Lee+l +iv+vhylevk Cucsa.217940.1 115 RSYWMLEEHLMHIVFVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.166	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.0E-7	489	591	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.2E-5	505	578	IPR002909	IPT domain
SuperFamily	SSF81296	2.02E-15	506	590	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.87E-15	690	800	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.831	693	771	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.40E-11	694	798	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.8E-14	695	802	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	1.75E-8	914	965	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.014	914	936	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.352	915	944	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.8E-4	916	935	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0038	937	959	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	938	962	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	940	959	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MADRGSYGLA PRLDIEQLLV EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF 60 DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSRS SSYSSSHNQA ASENADSPSP 180 TSTLTSFCED ADNEDTYQAT SRFHSFPTSP KMGNGLLVNK PDAGQSNFYF PHSSSNNAEA 240 WSTVPAVDYV TQVQKDGLGG NGGDTSMMGS QKTLSSASWE EILHQCTTGF QTVPSHVLTS 300 SIEPLPSGIV FGQENSTPDK LLTSNSAIKE DFGSALAMTS NWQVPFEDNT LSFSKEHVDH 360 FPDLYSVCDI DSRLTAQKSH DATFGRGHEM FCAHPGKQNE EILPNLELQF KEGESYSTAR 420 LSSDNDMSKE GTISYSLTLK QSLMDGEESL KKVDSFSRWV SKELGEVDDL HMHPSSGLTW 480 TTVECGDMVD DSSLSPSISE DQLFSITAFS PKWTVADLDT EVVVIGRFMG NNNGTNCHWS 540 CMFGEVEVPA EVLADGILCC HAPPHSVGRV PFYVTCSNRV ACSEVREFDY LAGSAQDVNV 600 TDIYNAGATE ELRMHLRFER LLSLEPSDPS NDLSESALEK QNLIRELITI KEEDDTYGED 660 PNPQNDQIQH QSKEFLFVKL MKEKLYSWLS HKVIEGGKGP NILDSEGQGV IHLAAALGYD 720 WAIRPIVAAG VSINFRDING WTALHWAALC GRELTVGTLI TLDASPGLMS DPSPEVPLGI 780 VPADLASING HKGISGFLAE AALTSYVSSI SMAETVQDGV SDASRTKAVQ TVSERRATPV 840 NDGFMPGDLS LKDSLTAVCN ATQAAGRIYQ ILRVQSFQRK KLSECGTDEF GSSDNSILSF 900 MKARARKSGL SNNPAHAAAV QIQKKFRGWR MRKEFLLIRQ RIVKIQAHVR GHQVRKQYKK 960 IVWSVGMIDK IILRWRRKGS GLRGFRSDAV PKDPPALMAP PTKEDDYDFL KEGRRQTEER 1020 FQKALTRVKS MAQYPEGRDQ YRRLLTVVQK CRETKGSAMV VTTTSEEVIE GDDMIDIDTL 1080 LDDDALMSMT FD*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MADRGSYGLA PRLDIEQLLV EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF  60
DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSRS SSYSSSHNQA ASENADSPSP  180
TSTLTSFCED ADNEDTYQAT SRFHSFPTSP KMGNGLLVNK PDAGQSNFYF PHSSSNNAEA  240
WSTVPAVDYV TQVQKDGLGG NGGDTSMMGS QKTLSSASWE EILHQCTTGF QTVPSHVLTS  300
SIEPLPSGIV FGQENSTPDK LLTSNSAIKE DFGSALAMTS NWQVPFEDNT LSFSKEHVDH  360
FPDLYSVCDI DSRLTAQKSH DATFGRGHEM FCAHPGKQNE EILPNLELQF KEGESYSTAR  420
LSSDNDMSKE GTISYSLTLK QSLMDGEESL KKVDSFSRWV SKELGEVDDL HMHPSSGLTW  480
TTVECGDMVD DSSLSPSISE DQLFSITAFS PKWTVADLDT EVVVIGRFMG NNNGTNCHWS  540
CMFGEVEVPA EVLADGILCC HAPPHSVGRV PFYVTCSNRV ACSEVREFDY LAGSAQDVNV  600
TDIYNAGATE ELRMHLRFER LLSLEPSDPS NDLSESALEK QNLIRELITI KEEDDTYGED  660
PNPQNDQIQH QSKEFLFVKL MKEKLYSWLS HKVIEGGKGP NILDSEGQGV IHLAAALGYD  720
WAIRPIVAAG VSINFRDING WTALHWAALC GRELTVGTLI TLDASPGLMS DPSPEVPLGI  780
VPADLASING HKGISGFLAE AALTSYVSSI SMAETVQDGV SDASRTKAVQ TVSERRATPV  840
NDGFMPGDLS LKDSLTAVCN ATQAAGRIYQ ILRVQSFQRK KLSECGTDEF GSSDNSILSF  900
MKARARKSGL SNNPAHAAAV QIQKKFRGWR MRKEFLLIRQ RIVKIQAHVR GHQVRKQYKK  960
IVWSVGMIDK IILRWRRKGS GLRGFRSDAV PKDPPALMAP PTKEDDYDFL KEGRRQTEER  1020
FQKALTRVKS MAQYPEGRDQ YRRLLTVVQK CRETKGSAMV VTTTSEEVIE GDDMIDIDTL  1080
LDDDALMSMT FD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658785.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0A0K2J6	0.0	A0A0A0K2J6_CUCSA; Uncharacterized protein
STRING	XP_004137052.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Cucsa.217940.1
Entrez Gene	101203707

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]