PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.220580.1
Common NameCsa_3G152140
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 69aa    MW: 7703.05 Da    PI: 4.6439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.220580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-094968221
                    -S---SGGGGTS--TTTTT- CS
         zf-CCCH  2 ktelCrffartGtCkyGdrC 21
                    +++ C +++rtG+C yG+rC
  Cucsa.220580.1 49 DEADCIYYLRTGFCGYGSRC 68
                    6899**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8364769IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-64968IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MKPYGHSIEG SHSDPSPEWT VSGPDTTSHG DSLWPLGSRD RDSYPERPDE ADCIYYLRTG  60
FCGYGSRCX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818487e-56LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132607e-56LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134198.11e-41PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU46e-15C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A0A0L8Z33e-40A0A0A0L8Z3_CUCSA; Uncharacterized protein
STRINGXP_004134198.15e-41(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.13e-17C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]