PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.232510.1

Common Name

Csa_2G360740

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 200aa MW: 22391.3 Da PI: 10.1515

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.232510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	13	66	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cucsa.232510.1 13 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 66 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.45E-16	10	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	11	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-24	13	66	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-8	14	65	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGFGSIKRSI RAPRMRWTTT LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH 60 LQMYRTVKST DKATDSAMKN QRQDIDGSGV SNCEISNNPS LTMWKSPNQK MKLFCSSMET 120 NQEMTSRWNQ FCNNTIGNNQ QQEKDRHNGN ANMKISSGVK NHNNNNNNLN LDFTLGCPNS 180 LTIHSNPHSS STELPLLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-72	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-72	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152789.2	1e-146	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0A0LP74	1e-145	A0A0A0LP74_CUCSA; Uncharacterized protein
STRING	XP_008444661.1	1e-131	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	2e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.232510.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]