PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.232750.1

Common Name

Csa_2G359985

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 194aa MW: 21733.9 Da PI: 9.4175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.232750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.4	3e-14	111	189	2	86
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k +++s+v+ +l lp +f+++h +k+ +tl de+g ++ + + rk++ +++GWk+F a++L +gD vvF++++ Cucsa.232750.1 111 IKSMVRSHVSGCFWLGLPSHFCKTHL-PKND-GVMTLIDEDGDEYPIIYLARKTG----FSGGWKGFSIAHKLSDGDAVVFQHIK 189 6999****************9993.3333.37***********555555....99*******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-20	104	191	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.6E-16	104	190	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.93E-23	108	191	No hit	No description
PROSITE profile	PS50863	10.546	110	194	IPR003340	B3 DNA binding domain
SMART	SM01019	4.4E-15	110	194	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-12	111	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGISNLSYEE CRQKRVEENK KRMEALNLPL LSQALLDSSP SKSSPKQLVV VRRSSRVAKQ 60 PTPVYAEVSH QISRARDFSA QFYASDEARK KAFERALELQ SGLEPNYPSC IKSMVRSHVS 120 GCFWLGLPSH FCKTHLPKND GVMTLIDEDG DEYPIIYLAR KTGFSGGWKG FSIAHKLSDG 180 DAVVFQHIKP TACK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	9e-98	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	9e-98	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022144315.1	1e-111	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	5e-60	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A0A0LKX3	1e-130	A0A0A0LKX3_CUCSA; Uncharacterized protein
STRING	XP_004160008.1	1e-131	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-52	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.232750.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]