PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.232760.1
Common NameCsa_2G359980, LOC101205473
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 230aa    MW: 25726.4 Da    PI: 10.2223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.232760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.2e-16127217199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+ ++ ++++ +  +tl de+g ++   +  rk++    l++GWk+F+ a++L +gD v+F++++   ++++v+
  Cucsa.232760.1 127 FIKSMLQSHVSGGFWLGLPSHFC-KNRLPNR-DGVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHKLADGDAVIFQFIK--PTTCKVH 213
                     89*********************.7877754.459***************656665....***********************886..6778999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Cucsa.232760.1 214 ILRT 217
                     9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-24121218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-19121218IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-25125216No hitNo description
SMARTSM010192.2E-21127218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.885127218IPR003340B3 DNA binding domain
PfamPF023621.3E-13127217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGIANLSYEE CRRKRLEENK KRMEALNLPM LSQALIDSSP SKSSPSKLTK PRVTQKELVV  60
VRRSSRVAKQ TAPVYAEVII NRVVIPRRIS KARDLSNRVY ASDEARKEAF ERAEQLQSGL  120
EPNYPSFIKS MLQSHVSGGF WLGLPSHFCK NRLPNRDGVM TLIDEDGDEY PTIYLARKTG  180
LSGGWKGFAV AHKLADGDAV IFQFIKPTTC KVHILRTNSS REDSDSNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-106LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-106LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152735.11e-171PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ47e-75Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0A0LNH01e-169A0A0A0LNH0_CUCSA; Uncharacterized protein
STRINGXP_004160007.11e-170(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-71B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]