PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.234080.1
Common NameCsa_2G271450, LOC101222339
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 794aa    MW: 91100.7 Da    PI: 6.5239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.234080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00051140188432
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                     ++ + E+r+R ++ + f +Lr+  P+ ++                    
  Cucsa.234080.1 140 KNEILEQRYRTNVGDLFGQLRKKHPWaDPkivkqfidsklfellgertV 188
                     57899*********************55455555555555555555551 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.1E-5112168IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045579.3E-12171263IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
PfamPF007492.8E-117271575IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
TIGRFAMsTIGR004403.5E-186271789IPR004514Glutamine-tRNA synthetase
Gene3DG3DSA:3.40.50.6208.8E-39271339IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.02E-85271584No hitNo description
PRINTSPR009872.0E-6274286IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780277288IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009872.0E-6303316IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.106.6E-44343447No hitNo description
PRINTSPR009872.0E-6448458IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6208.8E-39450499IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.101.4E-27500576IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
PfamPF039501.2E-40578769IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507154.97E-55578788IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.107.1E-30586696IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.104.1E-29697787IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MTLNNDNIDK DKLLEQFLRI GLDERTARNT VANNKVTANL SAVIHEAGVL DGCDRAVGNL  60
LYSVATKYPA NALIHRPILL DYITSNKVKT PAQLEAAFSF FSAAGSEIRL NEFESACGVG  120
VEVSVEEIEQ TVNEVFEERK NEILEQRYRT NVGDLFGQLR KKHPWADPKI VKQFIDSKLF  180
ELLGERTVAD NEKIAKKKKE KPAKVDDKLA ATVAPKQPPS EEDLNPYLIF PQPEDNYKVH  240
TEVFFSNGTI LRCCNTRELL EKHLKATGGR VLTRFPPEPN GYLHIGHAKA MFVDFGLAKE  300
RGGGCYLRYD DTNPEAEKKE YIDHIEEIVK WMGWEPFKIT YASDYFQELY ELAVELIRRG  360
HAYVDHQTPD EIKEYREKKM NSPWRDRPIA ESLKLFDEMK QGLIEEGKAT LRMKQDMQSE  420
NFNMYDLIAY RIKFTPHPHA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRASYY  480
WLLHALDLYQ PYVWEYSRLN VSNNVLSKRK LNRLVTEKWV DSWDDPRLLT LAGLRRKGVT  540
STAINAFVRG MGITRSDCSL IRFDRLEYHI REELNRTAAR AMVVLQPLKV VITNFENGSI  600
LDLDAKKWPE AQGDEASAFY KVPFSNIVYI EQSDFRLKDS KDYYGLAPGK SVLLRYAYPI  660
KCTDVILADD KETVLEIRAE YDASKKSKPK GVLHWVAQPS PGIKPLNVEV RLYDKLFLSE  720
NPAELDDWLA DLNPHSKVVL PSAFAVPELR NAVVGDTFQF ERLGYFTVDK DSTPEKLVFN  780
RTVTLRDSYK SSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ye6_A0.0147878771Glutamine--tRNA ligase
4ye9_A0.0147878771Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147055.10.0PREDICTED: glutamine--tRNA ligase-like
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A0A0LMF70.0A0A0A0LMF7_CUCSA; Uncharacterized protein
STRINGXP_004158365.10.0(Cucumis sativus)
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]