PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.237170.1

Common Name

Csa_5G649870, LOC101207003

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 164aa MW: 18501.7 Da PI: 6.2263

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.237170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.4e-18	4	53	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p gk++r++lg++ +e+Aa+a++ a++ l+g Cucsa.237170.1 4 NYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYHLPEMAAAAYDVAALHLRG 53 69**999.******8...557***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.0E-12	3	53	IPR001471	AP2/ERF domain
CDD	cd00018	3.16E-21	3	63	No hit	No description
PROSITE profile	PS51032	22.708	4	61	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.6E-31	4	62	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-34	4	67	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	4	62	IPR016177	DNA-binding domain
PRINTS	PR00367	4.7E-13	5	16	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-13	43	63	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDPNYRGVRK RKWGKWVSEI REPGKKTRIW LGSYHLPEMA AAAYDVAALH LRGPDARLNF 60 PDLADSFPRP ASSSPDHIQA AAHMAALRFA NTKPPEPAPA PVRVGLSASQ IQAINESPLD 120 SPTMWMQMAA EALSLEGHEW DDDEEYNYYN NMQHHHDHSI WDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-15	5	66	6	68	ATERF1
3gcc_A	4e-15	5	66	6	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681889	1e-165	LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBank	LN713263	1e-165	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141634.1	1e-118	PREDICTED: ethylene-responsive transcription factor ERF022
Swissprot	Q9LQ28	6e-48	ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBL	A0A0A0KUT8	1e-117	A0A0A0KUT8_CUCSA; Uncharacterized protein
STRING	XP_004141634.1	1e-117	(Cucumis sativus)
STRING	XP_004171437.1	1e-117	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1777	31	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33760.1	2e-49	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.237170.1
Entrez Gene	101207003

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]