PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.237800.1
Common NameCsa_5G647260, LOC101221536
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 140aa    MW: 15273.1 Da    PI: 10.6062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.237800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-171867255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +gr+v+eIr p   gk++r++lg+f ++e+Aa+a++ a+  l+g
  Cucsa.237800.1 18 PFRGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFASPEMAARAYDSAAAFLRG 67
                    69****888.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7981875IPR001471AP2/ERF domain
SMARTSM003805.6E-331881IPR001471AP2/ERF domain
PfamPF008472.1E-101967IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-291977IPR001471AP2/ERF domain
PRINTSPR003672.1E-111930IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-191977IPR016177DNA-binding domain
CDDcd000182.13E-181977No hitNo description
PRINTSPR003672.1E-115777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTQAQPRHLG ASGSITKPFR GVRKRSWGRY VSEIRLPGKK TRVWLGSFAS PEMAARAYDS  60
AAAFLRGTSA ILNFPDSVSS LPQPESCSRE HIQLAAAKAA AQVRTMETME GDGDQQGTRS  120
GWSSTMFEQV KEVPLLSPLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161780468ATERF1
3gcc_A1e-161780468ATERF1
5wx9_A2e-161379976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-157LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-157LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141611.15e-98PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ391272e-30TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0A0KSQ81e-96A0A0A0KSQ8_CUCSA; Uncharacterized protein
STRINGXP_004156238.14e-97(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]