PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.237820.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 353aa    MW: 39531.9 Da    PI: 8.4529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.237820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53151441129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yLkkkv+ +k+++ ev++evd++k+ePwdL++k++     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk +
  Cucsa.237820.1  15 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVVREVDLNKIEPWDLQEKCRIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 108
                     69****************************.99**************964433122456************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Cucsa.237820.1 109 RN-SYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 144
                     *9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-5814176IPR003441NAC domain
PROSITE profilePS5100556.97415176IPR003441NAC domain
PfamPF023655.6E-2816143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSSGGGSGG GGGGVPPGFR FHPTDEELLH YYLKKKVSFQ KFDMEVVREV DLNKIEPWDL  60
QEKCRIGSTP QNEWYFFSHK DRKYPTGSRT NRATNAGFWK ATGRDKCIRN SYKKIGMRKT  120
LVFYRGRAPH GQKTDWIMHE YRLEDADDPL SNNSVSTPSS PFLSEDGWVV CRVFKKKNLF  180
KVTNEGMGGG GGTSSANSDQ HLNNNNAHSS ASIATPHTFL HRESQYQLRQ PQQNYASHPT  240
FELNKSDLAL HYIPTPPQPS HFPHHHLFHP NLSTIKPGLP TSSSAYDYPA LSSLPPDTPL  300
MAKQLMSNNP ETSQPTDGIT EPWAMLDRLV TSHLGNENSS KDVRFDDEHG SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-501517815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141610.10.0PREDICTED: protein BEARSKIN2-like
SwissprotQ9SV871e-131BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0A0KXR90.0A0A0A0KXR9_CUCSA; Uncharacterized protein
STRINGXP_004141610.10.0(Cucumis sativus)
STRINGXP_004163740.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-126NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]