PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.239650.1
Common NameCsa_7G237830, LOC101211980
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 350aa    MW: 39736.2 Da    PI: 7.7536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.239650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.4e-50191522128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      pGfrFhPtdeelv++yL++kve+++l++ e ik++diyk++PwdLp      k+  ++kewyf++kr +ky+++ r+nr+t sg+Wkatg dk 
  Cucsa.239650.1  19 LPGFRFHPTDEELVSFYLRRKVEKRPLSI-ELIKQIDIYKHNPWDLPYgsscsKMGLGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKG 112
                     59***************************.89***************557777777799************************************ PP

             NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s+   ++e +glkktLv+y+g+a kg+ktdW+mhe+rl
  Cucsa.239650.1 113 VYSNggeGNECIGLKKTLVYYRGSAGKGSKTDWMMHEFRL 152
                     ***97666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.32918186IPR003441NAC domain
SuperFamilySSF1019411.23E-5219186IPR003441NAC domain
PfamPF023652.7E-2520152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
METPEVCNGE GDQEDEISLP GFRFHPTDEE LVSFYLRRKV EKRPLSIELI KQIDIYKHNP  60
WDLPYGSSCS KMGLGDKEWY FYCKRGRKYK NSIRPNRVTG SGFWKATGID KGVYSNGGEG  120
NECIGLKKTL VYYRGSAGKG SKTDWMMHEF RLPPPNNPTA ATTNNPKPNN FAQEAEIWTL  180
CRIFKRNVSG RRYGTSGSNN WNNKQLAAVS TTAIKNPIID DQKNIRLCSN NNIVDQIIVP  240
PPASEKGNNN NNNNGEISYI NFSSCDSSMI IQTEKKPLLL DPNNYLNNNH HHHHQEWNTN  300
NNSYDQYSSC SSSGIISPSI PYPTNQQLDI NDFFTNSNWD ELRSMVDML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47101928171NO APICAL MERISTEM PROTEIN
1ut4_B2e-47101928171NO APICAL MERISTEM PROTEIN
1ut7_A2e-47101928171NO APICAL MERISTEM PROTEIN
1ut7_B2e-47101928171NO APICAL MERISTEM PROTEIN
3swm_A2e-471019211174NAC domain-containing protein 19
3swm_B2e-471019211174NAC domain-containing protein 19
3swm_C2e-471019211174NAC domain-containing protein 19
3swm_D2e-471019211174NAC domain-containing protein 19
3swp_A2e-471019211174NAC domain-containing protein 19
3swp_B2e-471019211174NAC domain-containing protein 19
3swp_C2e-471019211174NAC domain-containing protein 19
3swp_D2e-471019211174NAC domain-containing protein 19
4dul_A2e-47101928171NAC domain-containing protein 19
4dul_B2e-47101928171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139890.20.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK556e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0A0K4180.0A0A0A0K418_CUCSA; Uncharacterized protein
STRINGXP_004159185.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-78NAC domain containing protein 42
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  7. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  8. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]