PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.240210.1
Common NameCsa_7G252700, LOC101216749
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 312aa    MW: 35831.3 Da    PI: 7.9534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.240210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-53121471129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+ +yL+kkv+ + +el +vi+evd++k+ePwdL+ k ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Cucsa.240210.1  12 VPPGFRFHPTDEELLYYYLRKKVSYEAIEL-DVIREVDLNKLEPWDLKdKcRIGSgHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTI 105
                     69****************************.9***************843444443666************************************ PP

             NAM  93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     + +     +++ +g++ktLvfy+grap+g+ktdW+mheyrle
  Cucsa.240210.1 106 HMSssnsnSKRIIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 147
                     998776655666****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-598166IPR003441NAC domain
PROSITE profilePS5100558.25212166IPR003441NAC domain
PfamPF023655.3E-2813146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMPENEQQLV SVPPGFRFHP TDEELLYYYL RKKVSYEAIE LDVIREVDLN KLEPWDLKDK  60
CRIGSGHQNE WYFFSHKDKK YPTGTRTNRA TSAGFWKATG RDKTIHMSSS NSNSKRIIGM  120
RKTLVFYTGR APHGQKTDWI MHEYRLEHHN PEVQEDGWVV CRVFKKKSQK SEVPEEQQLD  180
YYAHTKLGGS SGSAVEPHNN NDYSFDGCMQ LPQLFSPESS TVPTLPAISL NAAGAAVECP  240
QNIWRLSCGV VQHERLNTTD WSFLNRLLAL DQQSRSKSTL SDELTISRNF SFPFPYPYHL  300
PSGPDFIKFS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-501016815167NO APICAL MERISTEM PROTEIN
1ut4_B5e-501016815167NO APICAL MERISTEM PROTEIN
1ut7_A5e-501016815167NO APICAL MERISTEM PROTEIN
1ut7_B5e-501016815167NO APICAL MERISTEM PROTEIN
3swm_A5e-501016818170NAC domain-containing protein 19
3swm_B5e-501016818170NAC domain-containing protein 19
3swm_C5e-501016818170NAC domain-containing protein 19
3swm_D5e-501016818170NAC domain-containing protein 19
3swp_A5e-501016818170NAC domain-containing protein 19
3swp_B5e-501016818170NAC domain-containing protein 19
3swp_C5e-501016818170NAC domain-containing protein 19
3swp_D5e-501016818170NAC domain-containing protein 19
4dul_A5e-501016815167NAC domain-containing protein 19
4dul_B5e-501016815167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-155LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-155LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148307.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ9MA173e-96SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0A0K4750.0A0A0A0K475_CUCSA; Uncharacterized protein
STRINGXP_004148307.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-98NAC family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  5. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  6. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  7. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]