PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.240980.2

Common Name

Csa_3G775260, LOC101210630

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 540aa MW: 59510.3 Da PI: 6.9675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.240980.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.7	5e-08	185	247	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke +r rr NRe+Ar +R++a +eeL++k++ L eN+ Lk e e ke+++l++ + Cucsa.240980.2 185 EKEERRIRRILANRESARQTIRRRQALCEELTRKAADLAWENENLKREKEVALKEYQSLETTN 247 78999****************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.0E-6	185	247	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.3E-11	185	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.898	187	250	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-5	189	255	No hit	No description
SuperFamily	SSF57959	2.25E-5	189	242	No hit	No description
CDD	cd14702	1.70E-12	190	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA 60 EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE 120 QDRGVVKHQP SEKECTIQSQ PEPETTGEVT KMDKEAESSK VSPACTTSYQ FFGCRRSRRT 180 LTEAEKEERR IRRILANRES ARQTIRRRQA LCEELTRKAA DLAWENENLK REKEVALKEY 240 QSLETTNKEL KEQLAEAVKP KVEEIPGNHR SSHVQMPPLP TNCPLFLFSR LPYFWPSVVQ 300 STSSYHELPN VVVVPSSINP PANNNASVSG SSQTQENFTN GTGSRAPLCI LPPYSWLLPH 360 HDFRNQQSPQ IWFPAGNDQE GVYSKSQNSA ITSKDVRAES RHSSLPSAEE ENEAPDLNEA 420 PSLDESSNPK DDTQNTVGVA VEGFDTNARA PVRKVLSPVR LECIEPSSAA TLDNWNEDDH 480 GVSSRTCDDL CYFAERRHEP EVVPCKKTVD AMAATEARRR RKELTKLKNL YARQCRMQS*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA  60
EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE  120
QDRGVVKHQP SEKECTIQSQ PEPETTGEVT KMDKEAESSK VSPACTTSYQ FFGCRRSRRT  180
LTEAEKEERR IRRILANRES ARQTIRRRQA LCEELTRKAA DLAWENENLK REKEVALKEY  240
QSLETTNKEL KEQLAEAVKP KVEEIPGNHR SSHVQMPPLP TNCPLFLFSR LPYFWPSVVQ  300
STSSYHELPN VVVVPSSINP PANNNASVSG SSQTQENFTN GTGSRAPLCI LPPYSWLLPH  360
HDFRNQQSPQ IWFPAGNDQE GVYSKSQNSA ITSKDVRAES RHSSLPSAEE ENEAPDLNEA  420
PSLDESSNPK DDTQNTVGVA VEGFDTNARA PVRKVLSPVR LECIEPSSAA TLDNWNEDDH  480
GVSSRTCDDL CYFAERRHEP EVVPCKKTVD AMAATEARRR RKELTKLKNL YARQCRMQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	517	522	RRRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652005.1	0.0	PREDICTED: uncharacterized protein LOC101210630 isoform X2
TrEMBL	A0A0A0LBD4	0.0	A0A0A0LBD4_CUCSA; Uncharacterized protein
STRING	XP_004161242.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	1e-50	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.240980.2
Entrez Gene	101210630

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]