PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.241440.1
Common NameCsa_3G778200, LOC101214938
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 257aa    MW: 28156.4 Da    PI: 8.9544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.241440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.84.5e-332118199
                     EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k ltpsdv+k++rlv+pk++ae++                  g +  ++  l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++g
  Cucsa.241440.1   2 FEKPLTPSDVGKLNRLVIPKQYAEKYfplspsaavataaaaaaaGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAG 96 
                     99*****************************999999999999866667999******************************************* PP

                     -EEEEEE-SSSEE..EEEEE-S CS
              B3  78 DfvvFkldgrsefelvvkvfrk 99 
                     D+vvF++++r++ +l++++ ++
  Cucsa.241440.1  97 DVVVFERHRRDGDRLFIGWKKR 118
                     ******9999999999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.70E-291108No hitNo description
SuperFamilySSF1019361.31E-301118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-411122IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-302118IPR003340B3 DNA binding domain
SMARTSM010191.3E-272119IPR003340B3 DNA binding domain
PROSITE profilePS5086314.3812119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFEKPLTPSD VGKLNRLVIP KQYAEKYFPL SPSAAVATAA AAAAAGDSAD KGLLLSFEDE  60
SGKIWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDVVV FERHRRDGDR LFIGWKKRSA  120
PSPTDSAVAT GSGGVGGGGG WTRMFCSANS YPNSHRHLPS PPYQSSSDTP HAESSVQSQT  180
VSIGNSKILR LFGVDLECQT DMSEPEPPSL LNIGSSLTLS GRDPTRHTFY PHYSSPLPHH  240
MDFTFSQDVN QTKYQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-47113113130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136699.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-65Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0A0LBH20.0A0A0A0LBH2_CUCSA; Uncharacterized protein
STRINGXP_004136699.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-67B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]