PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242740.2
Common NameCsa_3G808380, LOC101222865
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 227aa    MW: 23457.6 Da    PI: 9.1716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242740.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-063254325
                    S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                     + C+ +     Ck+Gd+C+FaH
  Cucsa.242740.2 32 SRMCNKYNSAEGCKFGDKCHFAH 54
                    567888888889*********** PP
2zf-CCCH37.15.4e-12193217126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++fa+ G C +G+rC+FaHg
  Cucsa.242740.2 193 FKTKLCDNFAK-GSCTFGERCHFAHG 217
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-122861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4362957IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-72959IPR000571Zinc finger, CCCH-type
SMARTSM003560.643156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-1688169IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.6E-1897166IPR004088K Homology domain, type 1
SMARTSM003221.9E-1297167IPR004087K Homology domain
PROSITE profilePS5008414.73998162IPR004088K Homology domain, type 1
PfamPF000134.4E-12100164IPR004088K Homology domain, type 1
CDDcd001058.98E-16100163No hitNo description
Gene3DG3DSA:4.10.1000.109.4E-16190223IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7192218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164192219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8192222IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9193217IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMNLPPAPPA PRNMGAPPPP MSNGSATQAV KSRMCNKYNS AEGCKFGDKC HFAHAEWELG  60
KPSAPSHDDP RSMGHIPNRL ASRMDAGPPG LAASFGASST AKISVDASLA GAIIGKGGIN  120
SKQICRRTGA KLSIRDHESD PNLRNIELEG SFDQIKEASA MVQELIVTVS MAGPPKSATG  180
ATGGTAGPAG NNFKTKLCDN FAKGSCTFGE RCHFAHGAAE LRKSGV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136573.11e-165PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ31e-81C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0A0LEG51e-164A0A0A0LEG5_CUCSA; Uncharacterized protein
STRINGXP_004136573.11e-165(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-61C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]